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c1cadb7ee0
The v2 self-updater only overlays new files (copyFiles) and never removes files a release deleted; the one removal path (deleted_files) is not even sent by the web UI. A major upgrade (v2 → v3) removes thousands of files, so overlay-only leaves a broken hybrid, and stale bootstrap/cache config + package-discovery survive and break the new boot. Backport v3's manifest allow-list approach into this final v2 release: - Updater::cleanStaleFiles(?string $basePath): delete every file under the install not listed in the release's manifest.json, except the configured update_protected_paths. No manifest present → safe no-op (v2→v2 updates). - Updater::clearCompiledCaches(): wipe bootstrap/cache/*.php and compiled views so the freshly copied release re-reads config and re-runs package discovery. Called at the end of copyFiles() — the last point that runs as the currently-installed code before the new release boots, and necessary because bootstrap/cache is itself a protected path. - DeleteFilesController + UpdateCommand: when manifest.json is present, run cleanStaleFiles(); otherwise fall back to the legacy deleted_files list. No route or frontend change — both already call the delete step between copy and migrate. - config/invoiceshelf.php: add update_protected_paths (.env, storage, vendor, node_modules, Modules, public/storage, .git, bootstrap/cache, manifest.json). The v3 release zip already ships manifest.json (built by its make dist), so a v2 instance running this updater cleans itself up correctly on upgrade. Tested: tests/Unit/UpdaterTest.php covers stale removal, protected-path and manifest preservation, empty-dir pruning, no-manifest no-op, and invalid manifest. Full suite green.