diff --git a/superset/cli/export_example.py b/superset/cli/export_example.py
index 5c14b62dab3..cbf4bf6c589 100644
--- a/superset/cli/export_example.py
+++ b/superset/cli/export_example.py
@@ -155,7 +155,7 @@ def export_example(  # noqa: C901
 
     # Find the dashboard
     if dashboard_id:
-        dashboard = db.session.query(Dashboard).get(dashboard_id)
+        dashboard = db.session.get(Dashboard, dashboard_id)
     elif dashboard_slug:
         dashboard = db.session.query(Dashboard).filter_by(slug=dashboard_slug).first()
     else:
diff --git a/superset/commands/dataset/duplicate.py b/superset/commands/dataset/duplicate.py
index 85cfe290412..fb1cbb7048e 100644
--- a/superset/commands/dataset/duplicate.py
+++ b/superset/commands/dataset/duplicate.py
@@ -65,7 +65,7 @@ class DuplicateDatasetCommand(CreateMixin, BaseCommand):
         database_id = self._base_model.database_id
         table_name = self._properties["table_name"]
         editors = self._properties["editors"]
-        database = db.session.query(Database).get(database_id)
+        database = db.session.get(Database, database_id)
         if not database:
             raise SupersetErrorException(
                 SupersetError(
diff --git a/superset/commands/importers/v1/examples.py b/superset/commands/importers/v1/examples.py
index 773fc3c1bcf..9cc929f6f14 100644
--- a/superset/commands/importers/v1/examples.py
+++ b/superset/commands/importers/v1/examples.py
@@ -69,7 +69,7 @@ def transpile_virtual_dataset_sql(config: dict[str, Any], database_id: int) -> N
     if not sql:
         return
 
-    database = db.session.query(Database).get(database_id)
+    database = db.session.get(Database, database_id)
     if not database:
         logger.warning("Database %s not found, skipping SQL transpilation", database_id)
         return
diff --git a/superset/commands/sql_lab/estimate.py b/superset/commands/sql_lab/estimate.py
index fd68e201c63..b711efeaaea 100644
--- a/superset/commands/sql_lab/estimate.py
+++ b/superset/commands/sql_lab/estimate.py
@@ -66,7 +66,7 @@ class QueryEstimationCommand(BaseCommand):
         self._catalog = params.get("catalog")
 
     def validate(self) -> None:
-        self._database = db.session.query(Database).get(self._database_id)
+        self._database = db.session.get(Database, self._database_id)
         if not self._database:
             raise SupersetErrorException(
                 SupersetError(
diff --git a/superset/daos/dataset.py b/superset/daos/dataset.py
index a1df794984d..7b4b6db2ce8 100644
--- a/superset/daos/dataset.py
+++ b/superset/daos/dataset.py
@@ -630,7 +630,7 @@ class DatasetDAO(BaseDAO[SqlaTable]):
         dataset = DatasetDAO.find_by_id(dataset_id)
         if not dataset:
             return None
-        return db.session.query(SqlMetric).get(metric_id)
+        return db.session.get(SqlMetric, metric_id)
 
     @staticmethod
     def get_table_by_name(database_id: int, table_name: str) -> SqlaTable | None:
diff --git a/superset/mcp_service/chart/preview_utils.py b/superset/mcp_service/chart/preview_utils.py
index 1adddad0daf..c074d4357ff 100644
--- a/superset/mcp_service/chart/preview_utils.py
+++ b/superset/mcp_service/chart/preview_utils.py
@@ -81,7 +81,7 @@ def generate_preview_from_form_data(
         from superset.connectors.sqla.models import SqlaTable
         from superset.extensions import db
 
-        dataset = db.session.query(SqlaTable).get(dataset_id)
+        dataset = db.session.get(SqlaTable, dataset_id)
         if not dataset:
             return ChartError(
                 error=f"Dataset {dataset_id} not found", error_type="DatasetNotFound"
diff --git a/superset/migrations/versions/2020-09-24_12-04_3fbbc6e8d654_fix_data_access_permissions_for_virtual_.py b/superset/migrations/versions/2020-09-24_12-04_3fbbc6e8d654_fix_data_access_permissions_for_virtual_.py
index 5eabe3f1618..8a72975efc5 100644
--- a/superset/migrations/versions/2020-09-24_12-04_3fbbc6e8d654_fix_data_access_permissions_for_virtual_.py
+++ b/superset/migrations/versions/2020-09-24_12-04_3fbbc6e8d654_fix_data_access_permissions_for_virtual_.py
@@ -168,7 +168,7 @@ def upgrade():  # noqa: C901
         match_ds_id = re.match(r"\[None\]\.\[.*\]\(id:(\d+)\)", faulty_view_menu.name)
         if match_ds_id:
             dataset_id = int(match_ds_id.group(1))
-            dataset = session.query(SqlaTable).get(dataset_id)
+            dataset = session.get(SqlaTable, dataset_id)
             if dataset:
                 try:
                     new_view_menu = dataset.get_perm()
diff --git a/superset/migrations/versions/2021-02-04_09-34_070c043f2fdb_add_granularity_to_charts_where_missing.py b/superset/migrations/versions/2021-02-04_09-34_070c043f2fdb_add_granularity_to_charts_where_missing.py
index 7e3d7895ef7..6c8fc02e10c 100644
--- a/superset/migrations/versions/2021-02-04_09-34_070c043f2fdb_add_granularity_to_charts_where_missing.py
+++ b/superset/migrations/versions/2021-02-04_09-34_070c043f2fdb_add_granularity_to_charts_where_missing.py
@@ -92,7 +92,7 @@ def upgrade():
             if "granularity" in params or "granularity_sqla" in params:
                 continue
 
-            table = session.query(SqlaTable).get(slc.datasource_id)
+            table = session.get(SqlaTable, slc.datasource_id)
             if not table:
                 continue
 
diff --git a/superset/security/manager.py b/superset/security/manager.py
index f1f3f807819..fea0e47961f 100644
--- a/superset/security/manager.py
+++ b/superset/security/manager.py
@@ -3008,7 +3008,7 @@ class SupersetSecurityManager(  # pylint: disable=too-many-public-methods
             logger.warning(
                 "Dataset has no database will retry with database_id to set permission"
             )
-            database = self.session.query(Database).get(target.database_id)
+            database = self.session.get(Database, target.database_id)
             dataset_perm = self.get_dataset_perm(
                 target.id, target.table_name, database.database_name
             )
diff --git a/tests/unit_tests/commands/dataset/test_duplicate.py b/tests/unit_tests/commands/dataset/test_duplicate.py
index f03b921c949..aeb6efc176b 100644
--- a/tests/unit_tests/commands/dataset/test_duplicate.py
+++ b/tests/unit_tests/commands/dataset/test_duplicate.py
@@ -198,10 +198,8 @@ def test_duplicate_dataset_success() -> None:
         ),
         patch("superset.commands.dataset.duplicate.security_manager.raise_for_access"),
     ):
-        with patch(
-            "superset.commands.dataset.duplicate.db.session.query"
-        ) as mock_query:
-            mock_query.return_value.get.return_value = mock_database
+        with patch("superset.commands.dataset.duplicate.db.session.get") as mock_get:
+            mock_get.return_value = mock_database
             with patch(
                 "superset.commands.dataset.duplicate.DatasetDAO.validate_uniqueness",
                 return_value=True,
@@ -369,10 +367,8 @@ def test_duplicate_dataset_catalog_preserved() -> None:
         ),
         patch("superset.commands.dataset.duplicate.security_manager.raise_for_access"),
     ):
-        with patch(
-            "superset.commands.dataset.duplicate.db.session.query"
-        ) as mock_query:
-            mock_query.return_value.get.return_value = mock_database
+        with patch("superset.commands.dataset.duplicate.db.session.get") as mock_get:
+            mock_get.return_value = mock_database
             with patch(
                 "superset.commands.dataset.duplicate.DatasetDAO.validate_uniqueness",
                 return_value=True,
@@ -498,10 +494,8 @@ def test_duplicate_dataset_with_columns_and_metrics() -> None:
         ),
         patch("superset.commands.dataset.duplicate.security_manager.raise_for_access"),
     ):
-        with patch(
-            "superset.commands.dataset.duplicate.db.session.query"
-        ) as mock_query:
-            mock_query.return_value.get.return_value = mock_database
+        with patch("superset.commands.dataset.duplicate.db.session.get") as mock_get:
+            mock_get.return_value = mock_database
             with patch(
                 "superset.commands.dataset.duplicate.DatasetDAO.validate_uniqueness",
                 return_value=True,
diff --git a/tests/unit_tests/commands/importers/v1/examples_test.py b/tests/unit_tests/commands/importers/v1/examples_test.py
index be1134a7ad8..71bd1dcac1c 100644
--- a/tests/unit_tests/commands/importers/v1/examples_test.py
+++ b/tests/unit_tests/commands/importers/v1/examples_test.py
@@ -39,7 +39,7 @@ def test_transpile_virtual_dataset_sql_empty_sql():
 @patch("superset.commands.importers.v1.examples.db")
 def test_transpile_virtual_dataset_sql_database_not_found(mock_db):
     """Test graceful handling when database is not found."""
-    mock_db.session.query.return_value.get.return_value = None
+    mock_db.session.get.return_value = None
 
     config = {"table_name": "my_table", "sql": "SELECT * FROM foo"}
     original_sql = config["sql"]
@@ -56,7 +56,7 @@ def test_transpile_virtual_dataset_sql_success(mock_transpile, mock_db):
     """Test successful SQL transpilation with source engine."""
     mock_database = MagicMock()
     mock_database.db_engine_spec.engine = "mysql"
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
 
     mock_transpile.return_value = "SELECT * FROM `foo`"
 
@@ -77,7 +77,7 @@ def test_transpile_virtual_dataset_sql_no_source_engine(mock_transpile, mock_db)
     """Test transpilation when source_db_engine is not specified (legacy)."""
     mock_database = MagicMock()
     mock_database.db_engine_spec.engine = "mysql"
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
 
     mock_transpile.return_value = "SELECT * FROM `foo`"
 
@@ -95,7 +95,7 @@ def test_transpile_virtual_dataset_sql_no_change(mock_transpile, mock_db):
     """Test when transpilation returns same SQL (no dialect differences)."""
     mock_database = MagicMock()
     mock_database.db_engine_spec.engine = "postgresql"
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
 
     original_sql = "SELECT * FROM foo"
     mock_transpile.return_value = original_sql
@@ -118,7 +118,7 @@ def test_transpile_virtual_dataset_sql_error_fallback(mock_transpile, mock_db):
 
     mock_database = MagicMock()
     mock_database.db_engine_spec.engine = "mysql"
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
 
     mock_transpile.side_effect = QueryClauseValidationException("Parse error")
 
@@ -140,7 +140,7 @@ def test_transpile_virtual_dataset_sql_postgres_to_duckdb(mock_transpile, mock_d
     """Test transpilation from PostgreSQL to DuckDB."""
     mock_database = MagicMock()
     mock_database.db_engine_spec.engine = "duckdb"
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
 
     original_sql = """
         SELECT DATE_TRUNC('month', created_at) AS month, COUNT(*) AS cnt
@@ -173,7 +173,7 @@ def test_transpile_virtual_dataset_sql_postgres_to_clickhouse(mock_transpile, mo
     """
     mock_database = MagicMock()
     mock_database.db_engine_spec.engine = "clickhouse"
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
 
     # PostgreSQL syntax
     original_sql = "SELECT DATE_TRUNC('month', created_at) AS month FROM orders"
@@ -201,7 +201,7 @@ def test_transpile_virtual_dataset_sql_postgres_to_mysql(mock_transpile, mock_db
     """
     mock_database = MagicMock()
     mock_database.db_engine_spec.engine = "mysql"
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
 
     # PostgreSQL syntax with :: casting
     original_sql = "SELECT created_at::DATE AS date_only FROM orders"
@@ -226,7 +226,7 @@ def test_transpile_virtual_dataset_sql_postgres_to_sqlite(mock_transpile, mock_d
     """Test transpilation from PostgreSQL to SQLite."""
     mock_database = MagicMock()
     mock_database.db_engine_spec.engine = "sqlite"
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
 
     original_sql = "SELECT * FROM orders WHERE created_at > NOW() - INTERVAL '7 days'"
     transpiled_sql = (
diff --git a/tests/unit_tests/commands/sql_lab/test_estimate.py b/tests/unit_tests/commands/sql_lab/test_estimate.py
index c59f2f7bc68..0c77bed89ce 100644
--- a/tests/unit_tests/commands/sql_lab/test_estimate.py
+++ b/tests/unit_tests/commands/sql_lab/test_estimate.py
@@ -63,7 +63,7 @@ def test_validate_raises_when_database_not_found(
     mock_security_manager: MagicMock,
 ) -> None:
     """404 is raised before the access check when the database does not exist."""
-    mock_db.session.query.return_value.get.return_value = None
+    mock_db.session.get.return_value = None
 
     command = QueryEstimationCommand(_make_params())
     with pytest.raises(SupersetErrorException) as exc_info:
@@ -86,7 +86,7 @@ def test_validate_raises_when_database_access_denied(
 ) -> None:
     """SupersetSecurityException propagates when raise_for_access denies access."""
     mock_database = MagicMock()
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
     mock_security_manager.raise_for_access.side_effect = _security_exception()
 
     command = QueryEstimationCommand(_make_params())
@@ -111,7 +111,7 @@ def test_validate_succeeds_for_authorised_user(
 ) -> None:
     """validate() completes without error when access is granted."""
     mock_database = MagicMock()
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
     mock_security_manager.raise_for_access.return_value = None
 
     command = QueryEstimationCommand(_make_params())
@@ -136,7 +136,7 @@ def test_raise_for_access_called_with_correct_database(
     """The database object fetched from the session is passed to raise_for_access."""
     mock_database = MagicMock()
     mock_database.id = 42
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
     mock_security_manager.raise_for_access.return_value = None
 
     command = QueryEstimationCommand(_make_params(database_id=42))
@@ -401,7 +401,7 @@ def test_run_wraps_raw_jinja_undefined_error(
     from jinja2.exceptions import UndefinedError
 
     mock_database = MagicMock()
-    mock_db.session.query.return_value.get.return_value = mock_database
+    mock_db.session.get.return_value = mock_database
     mock_security_manager.raise_for_access.return_value = None
     mock_get_template_processor.return_value.process_template.side_effect = (
         UndefinedError("'foo' is undefined")
diff --git a/tests/unit_tests/mcp_service/chart/tool/test_get_chart_data.py b/tests/unit_tests/mcp_service/chart/tool/test_get_chart_data.py
index 8cb3b6ef714..d764bd153c3 100644
--- a/tests/unit_tests/mcp_service/chart/tool/test_get_chart_data.py
+++ b/tests/unit_tests/mcp_service/chart/tool/test_get_chart_data.py
@@ -1024,7 +1024,7 @@ class TestChartDataCommandValidation:
                 "superset.common.query_context_factory.QueryContextFactory"
             ) as mock_factory,
         ):
-            mock_db.session.query.return_value.get.return_value = mock_dataset
+            mock_db.session.get.return_value = mock_dataset
             mock_factory.return_value.create.return_value = MagicMock()
 
             from superset.mcp_service.chart.preview_utils import (
@@ -1073,7 +1073,7 @@ class TestChartDataCommandValidation:
                 "superset.common.query_context_factory.QueryContextFactory"
             ) as mock_factory,
         ):
-            mock_db.session.query.return_value.get.return_value = mock_dataset
+            mock_db.session.get.return_value = mock_dataset
             mock_factory.return_value.create.return_value = MagicMock()
 
             from superset.mcp_service.chart.preview_utils import (