fix(api): nan is not properly handled for athena connections (#37071)

This commit is contained in:
Ramiro Aquino Romero
2026-01-22 11:29:09 -04:00
committed by GitHub
parent cc972cad5a
commit fadab21493
2 changed files with 184 additions and 19 deletions

View File

@@ -41,6 +41,9 @@ def df_to_records(dframe: pd.DataFrame) -> list[dict[str, Any]]:
"""
Convert a DataFrame to a set of records.
NaN values are converted to None for JSON compatibility.
This handles division by zero and other operations that produce NaN.
:param dframe: the DataFrame to convert
:returns: a list of dictionaries reflecting each single row of the DataFrame
"""
@@ -52,6 +55,8 @@ def df_to_records(dframe: pd.DataFrame) -> list[dict[str, Any]]:
for record in records:
for key in record:
record[key] = _convert_big_integers(record[key])
record[key] = (
None if pd.isna(record[key]) else _convert_big_integers(record[key])
)
return records

View File

@@ -17,18 +17,19 @@
# pylint: disable=unused-argument, import-outside-toplevel
from datetime import datetime
import numpy as np
import pytest
from pandas import Timestamp
from pandas._libs.tslibs import NaT
from superset.dataframe import df_to_records
from superset.db_engine_specs import BaseEngineSpec
from superset.result_set import SupersetResultSet
from superset.superset_typing import DbapiDescription
from superset.utils import json as superset_json
def test_df_to_records() -> None:
from superset.db_engine_specs import BaseEngineSpec
from superset.result_set import SupersetResultSet
data = [("a1", "b1", "c1"), ("a2", "b2", "c2")]
cursor_descr: DbapiDescription = [
(column, "string", None, None, None, None, False) for column in ("a", "b", "c")
@@ -43,9 +44,6 @@ def test_df_to_records() -> None:
def test_df_to_records_NaT_type() -> None: # noqa: N802
from superset.db_engine_specs import BaseEngineSpec
from superset.result_set import SupersetResultSet
data = [(NaT,), (Timestamp("2023-01-06 20:50:31.749000+0000", tz="UTC"),)]
cursor_descr: DbapiDescription = [
("date", "timestamp with time zone", None, None, None, None, False)
@@ -60,9 +58,6 @@ def test_df_to_records_NaT_type() -> None: # noqa: N802
def test_df_to_records_mixed_emoji_type() -> None:
from superset.db_engine_specs import BaseEngineSpec
from superset.result_set import SupersetResultSet
data = [
("What's up?", "This is a string text", 1),
("What's up?", "This is a string with an 😍 added", 2),
@@ -100,9 +95,6 @@ def test_df_to_records_mixed_emoji_type() -> None:
def test_df_to_records_mixed_accent_type() -> None:
from superset.db_engine_specs import BaseEngineSpec
from superset.result_set import SupersetResultSet
data = [
("What's up?", "This is a string text", 1),
("What's up?", "This is a string with áccent", 2),
@@ -140,9 +132,6 @@ def test_df_to_records_mixed_accent_type() -> None:
def test_js_max_int() -> None:
from superset.db_engine_specs import BaseEngineSpec
from superset.result_set import SupersetResultSet
data = [(1, 1239162456494753670, "c1"), (2, 100, "c2")]
cursor_descr: DbapiDescription = [
("a", "int", None, None, None, None, False),
@@ -192,9 +181,6 @@ def test_js_max_int() -> None:
],
)
def test_max_pandas_timestamp(input_, expected) -> None:
from superset.db_engine_specs import BaseEngineSpec
from superset.result_set import SupersetResultSet
cursor_descr: DbapiDescription = [
("a", "datetime", None, None, None, None, False),
("b", "int", None, None, None, None, False),
@@ -203,3 +189,177 @@ def test_max_pandas_timestamp(input_, expected) -> None:
df = results.to_pandas_df()
assert df_to_records(df) == expected
def test_df_to_records_with_nan_from_division_by_zero() -> None:
"""Test that NaN values from division by zero are converted to None."""
# Simulate Athena query: select 0.00 / 0.00 as test
data = [(np.nan,), (5.0,), (np.nan,)]
cursor_descr: DbapiDescription = [("test", "double", None, None, None, None, False)]
results = SupersetResultSet(data, cursor_descr, BaseEngineSpec)
df = results.to_pandas_df()
assert df_to_records(df) == [
{"test": None},
{"test": 5.0},
{"test": None},
]
def test_df_to_records_with_mixed_nan_and_valid_values() -> None:
"""Test that NaN values are properly handled alongside valid numeric data."""
# Simulate a query with multiple columns containing NaN values
data = [
("row1", 10.5, np.nan, 100),
("row2", np.nan, 20.3, 200),
("row3", 30.7, 40.2, np.nan),
("row4", np.nan, np.nan, np.nan),
]
cursor_descr: DbapiDescription = [
("name", "varchar", None, None, None, None, False),
("value1", "double", None, None, None, None, False),
("value2", "double", None, None, None, None, False),
("value3", "int", None, None, None, None, False),
]
results = SupersetResultSet(data, cursor_descr, BaseEngineSpec)
df = results.to_pandas_df()
assert df_to_records(df) == [
{"name": "row1", "value1": 10.5, "value2": None, "value3": 100},
{"name": "row2", "value1": None, "value2": 20.3, "value3": 200},
{"name": "row3", "value1": 30.7, "value2": 40.2, "value3": None},
{"name": "row4", "value1": None, "value2": None, "value3": None},
]
def test_df_to_records_with_inf_and_nan() -> None:
"""Test that both NaN and infinity values are handled correctly."""
# Test various edge cases: NaN, positive infinity, negative infinity
data = [
(np.nan, "division by zero"),
(np.inf, "positive infinity"),
(-np.inf, "negative infinity"),
(0.0, "zero"),
(42.5, "normal value"),
]
cursor_descr: DbapiDescription = [
("result", "double", None, None, None, None, False),
("description", "varchar", None, None, None, None, False),
]
results = SupersetResultSet(data, cursor_descr, BaseEngineSpec)
df = results.to_pandas_df()
records = df_to_records(df)
# NaN should be converted to None
assert records[0]["result"] is None
assert records[0]["description"] == "division by zero"
# Infinity values should remain as-is (they're valid JSON)
assert records[1]["result"] == np.inf
assert records[2]["result"] == -np.inf
# Normal values should remain unchanged
assert records[3]["result"] == 0.0
assert records[4]["result"] == 42.5
def test_df_to_records_nan_json_serialization() -> None:
"""
Test that NaN values are properly converted to None for JSON serialization.
Without the pd.isna() check, np.nan values would be passed through to JSON
serialization, which either produces non-spec-compliant output or requires
special handling with ignore_nan flags throughout the codebase.
This test validates that our fix converts NaN to None for proper JSON
serialization.
"""
# Simulate Athena query: SELECT 0.00 / 0.00 as test
data = [(np.nan,), (5.0,), (np.nan,)]
cursor_descr: DbapiDescription = [("test", "double", None, None, None, None, False)]
results = SupersetResultSet(data, cursor_descr, BaseEngineSpec)
df = results.to_pandas_df()
# Get records with our fix
records = df_to_records(df)
# Verify NaN values are converted to None
assert records == [
{"test": None}, # NaN converted to None
{"test": 5.0},
{"test": None}, # NaN converted to None
]
# This should succeed with valid, spec-compliant JSON
json_output = superset_json.dumps(records)
parsed = superset_json.loads(json_output)
# Verify JSON serialization works correctly
assert parsed == records
# Demonstrate what happens WITHOUT the fix
# (simulate the old behavior by directly using to_dict)
records_without_fix = df.to_dict(orient="records")
# Verify the records contain actual NaN values (not None)
assert np.isnan(records_without_fix[0]["test"])
assert records_without_fix[1]["test"] == 5.0
assert np.isnan(records_without_fix[2]["test"])
# Demonstrate the actual bug: without the fix, ignore_nan=False raises ValueError
# This is the error users would see without our fix
with pytest.raises(
ValueError, match="Out of range float values are not JSON compliant"
):
superset_json.dumps(records_without_fix, ignore_nan=False)
# With ignore_nan=True, it works by converting NaN to null
# But this requires the flag to be set everywhere - our fix eliminates this need
json_with_ignore = superset_json.dumps(records_without_fix, ignore_nan=True)
parsed_with_ignore = superset_json.loads(json_with_ignore)
# The output is the same, but our fix doesn't require the ignore_nan flag
assert parsed_with_ignore[0]["test"] is None
def test_df_to_records_with_json_serialization_like_sql_lab() -> None:
"""
Test that mimics the actual SQL Lab serialization flow.
This shows how the fix prevents errors in the real usage path.
"""
# Simulate query with NaN results
data = [
("user1", 100.0, np.nan),
("user2", np.nan, 50.0),
("user3", 75.0, 25.0),
]
cursor_descr: DbapiDescription = [
("name", "varchar", None, None, None, None, False),
("value1", "double", None, None, None, None, False),
("value2", "double", None, None, None, None, False),
]
results = SupersetResultSet(data, cursor_descr, BaseEngineSpec)
df = results.to_pandas_df()
# Mimic sql_lab.py:360 - this is where df_to_records is used
records = df_to_records(df) or []
# Mimic sql_lab.py:332 - JSON serialization with Superset's custom json.dumps
# This should work without errors
json_str = superset_json.dumps(
records, default=superset_json.json_iso_dttm_ser, ignore_nan=True
)
# Verify it's valid JSON and NaN values are properly handled as null
parsed = superset_json.loads(json_str)
assert parsed[0]["value2"] is None # NaN became null
assert parsed[1]["value1"] is None # NaN became null
assert parsed[0]["value1"] == 100.0
# Also verify it works without ignore_nan flag (since we convert NaN to None)
json_str_no_flag = superset_json.dumps(
records, default=superset_json.json_iso_dttm_ser, ignore_nan=False
)
parsed_no_flag = superset_json.loads(json_str_no_flag)
assert parsed_no_flag == parsed # Same result